Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
cc215
Cardiac_Multi_view_segmentation
Commits
6fb204da
Commit
6fb204da
authored
Mar 17, 2021
by
cc215
💬
Browse files
updaye readme
parent
c74d1f3a
Changes
1
Hide whitespace changes
Inline
Side-by-side
ReadME.md
View file @
6fb204da
...
...
@@ -38,14 +38,14 @@ Results will be saved under `test_results` by default.
| | UKBB test (600) | | | ACDC (100) | | | M&Ms (150) | | |
|- |:-: |:-: |:-: |:-: |:-: |:-: |:-: |:-: |:-: |
| configurations | LV | MYO | RV | LV | MYO | RV | LV | MYO | RV |
| b
s=
1, roi size = 256, z_score | 0.9383 | 0.8780 | 0.8979 | 0.8940 | 0.8034 | 0.8237 | 0.8862 | 0.7889 | 0.8168 |
| b
s=
1, roi size = 192, z_score | 0.9371 | 0.8775 | 0.8962 | 0.8891 | 0.7981 | 0.8103 | 0.8725 | 0.7716 | 0.7954 |
| b
s=-1
, roi size = 192, z_score | 0.9139 | 0.8388 | 0.8779 | 0.8790 | 0.7818 | 0.8069 | 0.8679 | 0.7675 | 0.7926 |
| b
atch_size =
1, roi size = 256, z_score | 0.9383 | 0.8780 | 0.8979 | 0.8940 | 0.8034 | 0.8237 | 0.8862 | 0.7889 | 0.8168 |
| b
atch_size =
1, roi size = 192, z_score | 0.9371 | 0.8775 | 0.8962 | 0.8891 | 0.7981 | 0.8103 | 0.8725 | 0.7716 | 0.7954 |
| b
atch_size = -1 (use the whole volume as batch)
, roi size = 192, z_score | 0.9139 | 0.8388 | 0.8779 | 0.8790 | 0.7818 | 0.8069 | 0.8679 | 0.7675 | 0.7926 |
The model params are stored in
`./checkpoints/Unet_LVSA_trained_from_UKBB.pkl`
For optimal performance at deployment, please set it to instance normalization (--batch_size 1) and crop images to (--roi_size 256).
e.g.
-
If we want to predict test images from UKBB, we can simply r
an
-
If we want to predict test images from UKBB, we can simply r
un the following command:
`
python predict.py --sequence LVSA
\
--model_path './checkpoints/Unet_LVSA_trained_from_UKBB.pkl'
\
--root_dir '/vol/medic02/users/wbai/data/cardiac_atlas/UKBB_2964/sa/test'
\
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment