diff --git a/src/main/webapp/scripts/xnat/app/customPage.js b/src/main/webapp/scripts/xnat/app/customPage.js
index 3dd20bd8b1991bb92b18a88ce9aa0d7f614722a3..b2290809adf1c9b0c1c6d85ca31bb45723f00e7e 100644
--- a/src/main/webapp/scripts/xnat/app/customPage.js
+++ b/src/main/webapp/scripts/xnat/app/customPage.js
@@ -2,7 +2,11 @@
* Retrieve custom pages via AJAX
* Used in: /xnat-templates/screens/Page.vm
*/
-(function(NS, factory){
+
+var XNAT = getObject(XNAT);
+XNAT.app = getObject(XNAT.app||{});
+
+(function(factory){
if (typeof define === 'function' && define.amd) {
define(factory);
}
@@ -10,14 +14,11 @@
module.exports = factory();
}
else {
- return factory(NS);
+ return factory();
}
-}('app.customPage', function(NS, undefined){
-
- // setExtendedObject() hasn't been tested yet
- // var customPage = setExtendedObject(XNAT, NS);
+}(function(){
- var customPage = getObject(eval('XNAT.'+NS)||{});
+ var customPage = getObject(XNAT.app.customPage||{});
customPage.getName = function(){
var name = getQueryStringValue('view');
diff --git a/src/main/webapp/xnat-templates/layouts/Basic.vm b/src/main/webapp/xnat-templates/layouts/Basic.vm
new file mode 100644
index 0000000000000000000000000000000000000000..b0f4c7f55ea3d971a6eed2f72231882696cbdcb5
--- /dev/null
+++ b/src/main/webapp/xnat-templates/layouts/Basic.vm
@@ -0,0 +1,9 @@
+<!DOCTYPE html>
+##Copyright 2005 Harvard University / Howard Hughes Medical Institute (HHMI) All Rights Reserved
+<!-- start xnat-templates/layouts/Basic.vm -->
+<!--[if lt IE 9]><html class="ie ie8 ltie9 ltie10"><![endif]-->
+<!--[if IE 9]><html class="ie ie9 ltie10"><![endif]-->
+<!--[if gt IE 9]><!--> <html> <!--<![endif]-->
+ $screen_placeholder
+<!-- end xnat-templates/layouts/Basic.vm -->
+</html>
\ No newline at end of file
diff --git a/src/main/webapp/xnat-templates/layouts/Content.vm b/src/main/webapp/xnat-templates/layouts/Content.vm
new file mode 100644
index 0000000000000000000000000000000000000000..d4a7e6327758486fbb5017b2ef14933530f718ee
--- /dev/null
+++ b/src/main/webapp/xnat-templates/layouts/Content.vm
@@ -0,0 +1,11 @@
+<!-- start xnat-templates/layouts/Content.vm -->
+
+## probably don't want to load these since
+## they may already be loaded elsewhere
+##
+## #parse("/navigations/BaseJS.vm")
+## #parse("/navigations/AppJS.vm")
+
+$screen_placeholder
+
+<!-- end xnat-templates/layouts/Content.vm -->
diff --git a/src/main/webapp/xnat-templates/navigations/AppJS.vm b/src/main/webapp/xnat-templates/navigations/AppJS.vm
new file mode 100644
index 0000000000000000000000000000000000000000..21060b3c0c50950d3bf850b9b1116f62e60c2464
--- /dev/null
+++ b/src/main/webapp/xnat-templates/navigations/AppJS.vm
@@ -0,0 +1,26 @@
+## Main JavaScript and CSS files for XNAT
+
+## only load once
+#if (!$appJS)
+
+ <!-- app.css loaded last -->
+ <link rel="stylesheet" type="text/css" href="$content.getURI('style/app.css?v=1.7.0a1')">
+
+ <link rel="stylesheet" type="text/css" href="$content.getURI('scripts/xmodal-v1/xmodal.css?v=1.7.0a1')">
+ <script src="$content.getURI('scripts/xmodal-v1/xmodal.js')"></script>
+ <script src="$content.getURI('scripts/xmodal-v1/xmodal-migrate.js')"></script>
+
+ <!-- XNAT JLAPI scripts -->
+ <script src="$content.getURI('scripts/xnat/url.js')"></script>
+ <script src="$content.getURI('scripts/xnat/xhr.js')"></script>
+ ##<script src="$content.getURI('scripts/xnat/widget.js')"></script>
+ <script src="$content.getURI('scripts/xnat/ui/popup.js')"></script>
+ <script src="$content.getURI('scripts/xnat/ui/dialog.js')"></script>
+
+ #set ($appJS = true)
+
+#else
+
+ <!-- AppJS is loaded -->
+
+#end
diff --git a/src/main/webapp/xnat-templates/navigations/BaseJS.vm b/src/main/webapp/xnat-templates/navigations/BaseJS.vm
new file mode 100644
index 0000000000000000000000000000000000000000..8743a995a912307f5ae23836520566e789c41569
--- /dev/null
+++ b/src/main/webapp/xnat-templates/navigations/BaseJS.vm
@@ -0,0 +1,50 @@
+## Base JavaScript files
+
+## only load once
+#if (!$baseJS)
+
+ <!-- load polyfills before ANY other JavaScript -->
+ <script src="$content.getURI('scripts/polyfills.js')"></script>
+
+ <!-- set global vars that are used often -->
+ <script>
+
+ var XNAT = XNAT || {};
+ var serverRoot = "$content.getURI('')";
+ var csrfToken = "$!data.getSession().getAttribute("XNAT_CSRF")";
+ var showReason = typeof $showReason != 'undefined' ? $showReason : null;
+ var requireReason = typeof $requireReason != 'undefined' ? $showReason : null;
+
+ </script>
+ ## separate script tags so not everything breaks if showReason or requireReason blows up
+
+ <!-- XNAT global functions (no dependencies) -->
+ <script src="$content.getURI('scripts/globals.js')"></script>
+
+ <!-- required libraries -->
+ <script src="$content.getURI('scripts/lib/loadjs/loadjs.js')"></script>
+ <script src="$content.getURI('scripts/lib/jquery/jquery.min.js')"></script>
+ <script src="$content.getURI('scripts/lib/jquery/jquery-migrate-1.2.1.min.js')"></script>
+ <script>
+ // alias jQuery to jq
+ var jq = jQuery;
+ </script>
+
+ <!-- jQuery plugins -->
+ <link rel="stylesheet" type="text/css" href="$content.getURI('scripts/lib/jquery-plugins/chosen/chosen.min.css?v=1.7.0a1')">
+ <script src="$content.getURI('scripts/lib/jquery-plugins/chosen/chosen.jquery.min.js')"></script>
+ <script src="$content.getURI('scripts/lib/jquery-plugins/jquery.maskedinput.min.js')"></script>
+
+ <!-- other libraries -->
+ <script src="$content.getURI('scripts/lib/spawn/spawn.js')"></script>
+
+ <!-- XNAT utility functions -->
+ <script src="$content.getURI('scripts/utils.js')"></script>
+
+ #set ($baseJS = true)
+
+#else
+
+ <!-- BaseJS is loaded -->
+
+#end
diff --git a/src/main/webapp/xnat-templates/navigations/HeaderIncludes.vm b/src/main/webapp/xnat-templates/navigations/HeaderIncludes.vm
index 9368f855816a9f23c9138b4ca2c45f6bc0bc5d9e..6de326674da63e26d033e1dd817613bf0b6aad5e 100755
--- a/src/main/webapp/xnat-templates/navigations/HeaderIncludes.vm
+++ b/src/main/webapp/xnat-templates/navigations/HeaderIncludes.vm
@@ -15,56 +15,12 @@
<meta http-equiv="expires" content="-1">
<meta http-equiv="expires" content="Tue, 01 Jan 1980 1:00:00 GMT">
-<!-- load polyfills before ANY other JavaScript -->
-<script type="text/javascript" src="$content.getURI('scripts/polyfills.js')"></script>
-<!-- set global vars that are used often -->
-<script type="text/javascript">
+## pull in the base JavaScript files
+$navigation.setTemplate("/BaseJS.vm")
- var serverRoot = "$content.getURI('')";
- var csrfToken = "$!data.getSession().getAttribute("XNAT_CSRF")";
- var showReason = typeof $showReason != 'undefined' ? $showReason : null;
- var requireReason = typeof $requireReason != 'undefined' ? $showReason : null;
-</script>
-## separate script tags so not everything breaks if showReason or requireReason blows up
-
-<!-- XNAT global functions (no dependencies) -->
-<script type="text/javascript" src="$content.getURI('scripts/globals.js')"></script>
-
-<!-- required libraries -->
<script>
- // loads minified versions by default
- // add ?debug=true to the query string
- // or #debug to the url hash to load
- // the non-minified versions
- writeScripts([
- scriptUrl('lib/loadjs/loadjs'),
- scriptUrl('lib/jquery/jquery|.min'),
- scriptUrl('lib/jquery/jquery-migrate-1.2.1|.min'),
- ]);
-</script>
-##<script type="text/javascript" src="$content.getURI('scripts/lib/loadjs/loadjs.js')"></script>
-##<script type="text/javascript" src="$content.getURI('scripts/lib/jquery/jquery.min.js')"></script>
-##<script type="text/javascript" src="$content.getURI('scripts/lib/jquery/jquery-migrate-1.2.1.min.js')"></script>
-<script type="text/javascript">
- // use 'jq' to avoid _possible_ conflicts with Velocity
- var jq = jQuery;
-</script>
-
-<!-- jQuery plugins -->
-<link rel="stylesheet" type="text/css" href="$content.getURI('scripts/lib/jquery-plugins/chosen/chosen.min.css?v=1.7.0a1')">
-<script type="text/javascript" src="$content.getURI('scripts/lib/jquery-plugins/chosen/chosen.jquery.min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/lib/jquery-plugins/jquery.maskedinput.min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/lib/jquery-plugins/jquery.spawn.js')"></script>
-
-<!-- other libraries -->
-<script type="text/javascript" src="$content.getURI('scripts/lib/spawn/spawn.js')"></script>
-
-<!-- XNAT utility functions -->
-<script type="text/javascript" src="$content.getURI('scripts/utils.js')"></script>
-
-<script type="text/javascript">
/*
* XNAT global namespace object, which will not be overwriten if
@@ -206,7 +162,7 @@
})(XNAT.data.todaysDate);
</script>
-<script type="text/javascript">
+<script>
// initialize "Chosen" menus on DOM load
// all <select class="chosen-menu"> elements
// will be converted
@@ -214,39 +170,43 @@
// the jQuery DOM-ready queue
jq(function(){chosenInit()});
</script>
-<script type="text/javascript" src="$content.getURI('scripts/xdat.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/DynamicJSLoad.js')"></script>
+<script src="$content.getURI('scripts/xdat.js')"></script>
+<script src="$content.getURI('scripts/DynamicJSLoad.js')"></script>
<!-- YAHOO USER INTERFACE files below here -->
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/yahoo-dom-event/yahoo-dom-event.js')"></script>
-##<script type="text/javascript" src="$content.getURI('scripts/yui/build/event/event.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/event/event-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/container/container-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/menu/menu-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/element/element-beta-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/button/button-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/connection/connection-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/treeview/treeview-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/cookie/cookie-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/tabview/tabview-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/datasource/datasource-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/resize/resize-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/dragdrop/dragdrop-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/datatable/datatable-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/paginator/paginator-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/json/json-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/xnat_loader.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/LeftBarTreeView.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/justification/justification.js')"></script>
-<script type="text/javascript">
+<script src="$content.getURI('scripts/yui/build/yahoo-dom-event/yahoo-dom-event.js')"></script>
+##<script src="$content.getURI('scripts/yui/build/event/event.js')"></script>
+<script src="$content.getURI('scripts/yui/build/event/event-min.js')"></script>
+<script src="$content.getURI('scripts/yui/build/container/container-min.js')"></script>
+<script src="$content.getURI('scripts/yui/build/menu/menu-min.js')"></script>
+<script src="$content.getURI('scripts/yui/build/element/element-beta-min.js')"></script>
+<script src="$content.getURI('scripts/yui/build/button/button-min.js')"></script>
+<script src="$content.getURI('scripts/yui/build/connection/connection-min.js')"></script>
+<script src="$content.getURI('scripts/yui/build/treeview/treeview-min.js')"></script>
+<script src="$content.getURI('scripts/yui/build/cookie/cookie-min.js')"></script>
+<script src="$content.getURI('scripts/yui/build/tabview/tabview-min.js')"></script>
+<script src="$content.getURI('scripts/yui/build/datasource/datasource-min.js')"></script>
+<script src="$content.getURI('scripts/yui/build/resize/resize-min.js')"></script>
+<script src="$content.getURI('scripts/yui/build/dragdrop/dragdrop-min.js')"></script>
+<script src="$content.getURI('scripts/yui/build/datatable/datatable-min.js')"></script>
+<script src="$content.getURI('scripts/yui/build/paginator/paginator-min.js')"></script>
+<script src="$content.getURI('scripts/yui/build/json/json-min.js')"></script>
+<script src="$content.getURI('scripts/yui/xnat_loader.js')"></script>
+<script src="$content.getURI('scripts/LeftBarTreeView.js')"></script>
+<script src="$content.getURI('scripts/justification/justification.js')"></script>
+<script>
// The YUIDOM alias is used throughout XNAT
var YUIDOM = YAHOO.util.Dom;
XNAT.dom = getObject(XNAT.dom||{});
- XNAT.dom.addFormCSRF = function(__form){
- __form = isDefined(__form) ? $$(__form) : jq('form');
- __form.append('<input type="hidden" name="XNAT_CSRF" value="' + csrfToken + '">')
+ XNAT.dom.addFormCSRF = function(form){
+ $$(form||'form').each(function(){
+ var form$ = $(this);
+ if (!form$.has('input[name="XNAT_CSRF"]').length){
+ form$.append('<input type="hidden" name="XNAT_CSRF" value="' + csrfToken + '">')
+ }
+ });
};
jq(function(){
@@ -260,29 +220,19 @@
<!-- YUI css -->
<link rel="stylesheet" type="text/css" href="$content.getURI('scripts/yui/build/assets/skins/sam/skin.css?v=1.7.0a1')">
-<!-- xdat.css and xnat.css loaded last to override YUI styles -->
-<link rel="stylesheet" type="text/css" href="$content.getURI('style/app.css?v=1.7.0a1')">
-##<link rel="stylesheet" type="text/css" href="$content.getURI('style/xnat.css?v=1.7.0a1')">
-##<link rel="stylesheet" type="text/css" href="$content.getURI('style/icons.css?v=1.7.0a1')">
+<!-- date input stuff -->
+<link type="text/css" rel="stylesheet" href="$content.getURI('scripts/yui/build/calendar/assets/skins/sam/calendar.css?v=1.7.0a1')">
+##<script src="$content.getURI('scripts/yui/build/calendar/calendar.js')"></script>
+<script src="$content.getURI('scripts/yui/build/calendar/calendar-min.js')"></script>
+<script src="$content.getURI('scripts/ezCalendar.js')"></script>
+
-<link rel="stylesheet" type="text/css" href="$content.getURI('scripts/xmodal-v1/xmodal.css?v=1.7.0a1')">
-<script type="text/javascript" src="$content.getURI('scripts/xmodal-v1/xmodal.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/xmodal-v1/xmodal-migrate.js')"></script>
+## pull in the XNAT app JavaScript files
+$navigation.setTemplate("/AppJS.vm")
-<link rel="stylesheet" type="text/css" href="$content.getURI('scripts/tabWrangler/tabWrangler.css?v=1.7.0a1')">
-<script type="text/javascript" src="$content.getURI('scripts/tabWrangler/tabWrangler.js')"></script>
-<!-- date input stuff -->
-<link type="text/css" rel="stylesheet" href="$content.getURI('scripts/yui/build/calendar/assets/skins/sam/calendar.css?v=1.7.0a1')">
-##<script type="text/javascript" src="$content.getURI('scripts/yui/build/calendar/calendar.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/yui/build/calendar/calendar-min.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/ezCalendar.js')"></script>
+<link rel="stylesheet" type="text/css" href="$content.getURI('scripts/tabWrangler/tabWrangler.css?v=1.7.0a1')">
+<script src="$content.getURI('scripts/tabWrangler/tabWrangler.js')"></script>
-<!-- XNAT JLAPI scripts -->
-<script type="text/javascript" src="$content.getURI('scripts/xnat/url.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/xnat/xhr.js')"></script>
-##<script type="text/javascript" src="$content.getURI('scripts/xnat/widget.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/xnat/ui/popup.js')"></script>
-<script type="text/javascript" src="$content.getURI('scripts/xnat/ui/dialog.js')"></script>
#addGlobalCustomScreens("header")
diff --git a/src/main/webapp/xnat-templates/navigations/htmlOpen.vm b/src/main/webapp/xnat-templates/navigations/htmlOpen.vm
index 1e874a5dded171926a5181a4ee804f6e97f40cb1..f2b595ab704525605adf0587d783e93e47e9bb46 100644
--- a/src/main/webapp/xnat-templates/navigations/htmlOpen.vm
+++ b/src/main/webapp/xnat-templates/navigations/htmlOpen.vm
@@ -1,12 +1,8 @@
<!DOCTYPE html>
##Copyright 2005 Harvard University / Howard Hughes Medical Institute (HHMI) All Rights Reserved
-<!--[if lt IE 7]> <html class="ie ie6 ltie7 ltie8 ltie9 ltie10 no-js"> <![endif]-->
-<!--[if IE 7]> <html class="ie ie7 ltie8 ltie9 ltie10 no-js"> <![endif]-->
-<!--[if IE 8]> <html class="ie ie8 ltie9 ltie10 no-js"> <![endif]-->
-<!--[if IE 9]> <html class="ie ie9 ltie10 no-js"> <![endif]-->
-<!--[if gt IE 9]><!--> <html class="no-js"> <!--<![endif]-->
-##<!-- the "no-js" class is for Modernizr - are we even using that? -->
-
+<!--[if lt IE 9]><html class="ie ie8 ltie9 ltie10"><![endif]-->
+<!--[if IE 9]><html class="ie ie9 ltie10"><![endif]-->
+<!--[if gt IE 9]><!--><html><!--<![endif]-->
<head>
<script type="text/javascript">
var XNAT = {};
diff --git a/src/main/webapp/xnat-templates/screens/Basic.vm b/src/main/webapp/xnat-templates/screens/Basic.vm
new file mode 100644
index 0000000000000000000000000000000000000000..98eb09a9107efaa28f6ac5016efb7c652a00d4d0
--- /dev/null
+++ b/src/main/webapp/xnat-templates/screens/Basic.vm
@@ -0,0 +1,32 @@
+## There's not a Java class file for this template yet.
+###* @vtlvariable name="displayManager" type="org.nrg.xdat.display.DisplayManager" *#
+###* @vtlvariable name="par_count" type="java.lang.Integer" *#
+###* @vtlvariable name="data" type="org.apache.turbine.util.RunData" *#
+###* @vtlvariable name="turbineUtils" type="org.nrg.xdat.turbine.utils.TurbineUtils" *#
+###* @vtlvariable name="siteConfig" type="java.util.Properties" *#
+###* @vtlvariable name="content" type="org.apache.turbine.services.pull.tools.ContentTool" *#
+#set ($template = $data.getTemplateInfo())
+$!template.setLayoutTemplate("Basic.vm")
+<head>
+ <!-- start xnat-templates/screens/Basic.vm -->
+
+ ## base JavaScript libraries
+ #parse("/navigations/BaseJS.vm")
+
+ ## XNAT css and JLAPI scripts
+ #parse("/navigations/AppJS.vm")
+
+</head>
+<body id="basic-page" class="xnat app basic">
+
+ <!-- Bare-bones HTML file. No YUI files and only -->
+ <!-- essential js and css files for new pages. -->
+
+
+ <!-- ================= -->
+ <!-- CONTENT GOES HERE -->
+ <!-- ================= -->
+
+
+ <!-- end xnat-templates/screens/Basic.vm -->
+</body>
\ No newline at end of file
diff --git a/src/main/webapp/xnat-templates/screens/Blank.vm b/src/main/webapp/xnat-templates/screens/Blank.vm
new file mode 100644
index 0000000000000000000000000000000000000000..454822f7fb61a882b025a1a29375262c25208a3c
--- /dev/null
+++ b/src/main/webapp/xnat-templates/screens/Blank.vm
@@ -0,0 +1,4 @@
+#set ($template = $data.getTemplateInfo())
+$!template.setLayoutTemplate("Content.vm")
+
+<p>It's blank.</p>