Python code update and visualization features added

python/naming/generateRandom.py

+#!/usr/bin/python
+
+##import math, copy
+##import numpy as np
+##import collections
+##import sys
+##
+##
+# matlibplot
+import matplotlib.path as mplPath
+import matplotlib.pyplot as plt
+import matplotlib.figure as pfig
+from matplotlib.widgets import Button
+
+from optparse import OptionParser
+##
+### my classes
+##from param.var import *
+
+#from modules.cell import * 
+#from modules.tc import *
+#from modules.matrices import *
+#from modules.wafer import *
+from modules.panel import *
+# geometry from Paul
+#from Geometry.geom import *
+from modules.points import *
+
+from modules.seedButton import *
+  
+
+######## main ########
+def main():
+    
+    parser = OptionParser()
+    parser.add_option('-f', '--file', dest='fOutName',
+                      help='file out name')
+
+    (opt, args) = parser.parse_args()
+    
+    WAFER_WIDTH = 12.37 # 8'   
+    WAFER_SIDE = WAFER_WIDTH/math.sqrt(3.0)
+ 
+    fig = plt.figure('Test', figsize=(17,11) )
+
+    p = Panel(WAFER_SIDE)
+    p.gen_random_event( nSeeds=3, nNonSeeds=20 )
+    p.dump_to_file( opt.fOutName )
+    
+#    p.draw()
+#    plt.ylim([-20, 15])
+#    plt.xlim([-25, 30])
+#    plt.ylim([-10, 10])
+#    plt.xlim([-10, 10])
+ 
+ 
+#    cursor_click = fig.canvas.mpl_connect( 'button_press_event', p.on_click )
+
+#    def oibo( event ) :
+#        print 'oibo: this is something that shoul be still implemented... sorry! Try later this year.'
+
+#    reset_ax = plt.axes( [0.01, 0.22, 0.09, 0.05] )
+#    reset_ax.set_gid( 1 )
+#    reset_button = Button(reset_ax, 'reset ') 
+#    reset_button.on_clicked( p.gui_reset )
+    
+#    addMP7event_ax = plt.axes( [0.01, 0.16, 0.09, 0.05] )
+#    addMP7event_ax.set_gid( 2 )
+#    addMP7event_button = Button( addMP7event_ax, 'add event' ) 
+#    addMP7event_button.on_clicked( p.gui_add_mp7_event )
+
+#    genMP7file_ax = plt.axes( [0.01, 0.1, 0.09, 0.05] )
+#    genMP7file_ax.set_gid( 3 )
+#    genMP7file_button = Button(genMP7file_ax, 'generate MP7 file ') 
+#    genMP7file_button.on_clicked( p.gui_dump_mp7 )
+
+#    plt.show()
+
+# if python says run, then we should run
+if __name__ == '__main__':
+    main()
+
+

python/naming/modules/cluster.py

+
+# data types 
+from data_types import *
+
+
+class cluster :
+
+    def __init__( self, seed ) :
+        # wafers' ofssets of the TCid (0,0)
+        self.panelOffsets = [ HGCid(row=8, col=0), HGCid(row=16, col=4), HGCid(row=4, col=4), HGCid(row=12, col=8), HGCid(row=0, col=8), HGCid(row=8, col=12) ]
+        self.tcs = [ seed ]
+
+    def is_NN( self, tcToTest, verbose=False) :
+        #if self.contains(tcToTest) :
+        #    return False
+        
+        tcToTestId = tcToTest.hgc_id + self.panelOffsets[ tcToTest.wafer ]
+        if verbose :
+            print 'CLUSTER:'
+            for tc in self.tcs :   
+                print 'row:'+str(tc.hgc_id.row)+' col:'+str(tc.hgc_id.col)
+            print 'testing tc, wafer:'+str(tcToTest.wafer)+', row:'+str(tcToTest.hgc_id.row)+', col:'+str(tcToTest.hgc_id.col)
+        
+        for tc in self.tcs :   
+            tcId = tc.hgc_id + self.panelOffsets[ tc.wafer ]
+            if ( ( ( tcToTestId.row == tcId.row     ) and ( tcToTestId.col == tcId.col + 1 ) ) or
+                 ( ( tcToTestId.row == tcId.row     ) and ( tcToTestId.col == tcId.col - 1 ) ) or
+                 ( ( tcToTestId.row == tcId.row + 1 ) and ( tcToTestId.col == tcId.col     ) ) or
+                 ( ( tcToTestId.row == tcId.row - 1 ) and ( tcToTestId.col == tcId.col     ) ) or
+                 ( ( tcToTestId.row == tcId.row + 1 ) and ( tcToTestId.col == tcId.col + 1 ) ) or
+                 ( ( tcToTestId.row == tcId.row - 1 ) and ( tcToTestId.col == tcId.col - 1 ) ) ) :
+                if verbose :
+                    print '>>> is NN'
+                return True
+        if verbose :
+            print '>>> is NOT NN'
+        return False
+
+    def is_pertinent( self, tcToTest, nRows, nCols ) :
+        tcToTestId = tcToTest.hgc_id + self.panelOffsets[ tcToTest.wafer ]
+        seedId = self.tcs[0].hgc_id + self.panelOffsets[ self.tcs[0].wafer ]  
+        diffID = seedId - tcToTestId
+
+        if diffID.row >= -(nRows-1)/2  and diffID.row <= (nRows-1)/2 and diffID.col >= -(nCols-1)/2 and diffID.col <= (nCols-1)/2 :
+            return True
+        else :
+            return False
+
+    def contains( self, tcToTest ) :
+        for tc in self.tcs :
+            if tcToTest == tc :
+                return True
+        return False
+    
+    def addTC( self, tc ) :
+        self.tcs.append( tc )
+
+    def getTCs( self ) :
+        return self.tcs
+    

python/naming/modules/data_types.py

 
+import random
+
 from points import *
 
 # matlibplot
@@ -7,9 +9,12 @@ import matplotlib.pyplot as plt
 
 
 class HGCid :
-    def __init__( self, row=999, col=999 ) :
-        self.row = row
-        self.col = col
+    def __init__( self, row=999, col=999, rnd=False ) :
+        if rnd :
+            self.randomize()
+        else :
+            self.row = row
+            self.col = col
     
     def __str__( self ) :
         return '['+str(self.row)+','+str(self.col)+']'
@@ -18,7 +23,23 @@ class HGCid :
         if self.row == other.row and self.col == other.col :
             return True
         return False
+    
+    def __add__( self, other ) :
+        return HGCid( self.row + other.row, self.col + other.col)
+
+    def __radd__( self, other ) :
+        return HGCid( self.row + other.row, self.col + other.col)
+    
+    def __sub__( self, other ) :
+        return HGCid( self.row - other.row, self.col - other.col)
 
+    def __rsub__( self, other ) :
+        return HGCid( other.row - self.row, other.col - self.col)
+    
+    def randomize( self, maxRow , maxCol ) :
+        self.row = random.randint(0, maxRow)
+        self.col = random.randint(0, maxCol)
+    
     def get_row( self ) :
         return self.row
         
@@ -51,11 +72,27 @@ class HGCwordMP7 :
         self.is_eoe_word = eoe_word
                 
         if self.is_soe_word or self.is_eoe_word :
-            self.valid = 0   # 1b
-
+            self.valid = 0   # 1b        
+            
     def __str__( self ) :
         return self.get_32b_hex_string()
 
+    def __eq__( self, other ) :
+        if self.get_32b_hex_string() == other.get_32b_hex_string() :
+            return True
+        return False
+    
+    def is_soe( self ) :
+        return self.is_soe_word
+    
+    def is_eoe( self ) :
+        return self.is_eoe_word
+    
+    def is_zero( self ) :
+        if self.get_32b_hex_string() == '0v00000000' :
+            return True
+        return False
+
     def set_hex_string( self, str_word ) :
         
         if str_word == '0vbcbcbcbc' or str_word == '0vfbfbfbfb' :
@@ -100,5 +137,3 @@ class HGCwordMP7 :
 
         return string_out
 
-  
-        

python/naming/modules/mp7.py

 
 #import numpy as np
 import collections 
+import random
 
 # matlibplot
 import matplotlib.path as mplPath
 import matplotlib.pyplot as plt
 
-# data types
-from data_types import HGCwordMP7
+# my classes
+from data_types import *
+from cluster import *
 
 
 class MP7 :
@@ -22,7 +24,28 @@ class MP7 :
             self.data_32b.append( [] )
             
         self.add_zeros()
-        
+
+    def __eq__( self, other ) :
+        nullMP7word = HGCwordMP7()
+        eoeMP7word  = HGCwordMP7(eoe_word=True)
+        soeMP7word  = HGCwordMP7(soe_word=True)
+        for ich,data in enumerate( other.data_32b ) :
+            c = data.count( nullMP7word ) + data.count( soeMP7word ) + data.count( eoeMP7word )
+            d = len(data) - c
+            cIn = self.data_32b[ich].count( nullMP7word ) + self.data_32b[ich].count( soeMP7word ) + self.data_32b[ich].count( eoeMP7word )
+            dIn = len(self.data_32b[ich]) - cIn
+            #print len(self.data_32b[ich]),len(data)
+            #print cIn,c
+            #print dIn,d
+            if dIn != d :
+                return False
+            for wother in data :
+                if wother == soeMP7word or wother == eoeMP7word :
+                    continue
+                if wother not in self.data_32b[ich]:
+                    return False
+        return True
+    
     def load_file( self, file_name ) :
         f = open(file_name, 'r')
         f.readline() # board type
@@ -37,15 +60,15 @@ class MP7 :
             chs = line.split(' ')
             for ich,ch in enumerate(chs) :
                 w = HGCwordMP7()
-                print ch
+                #print ch
                 w.set_hex_string( ch )
                 self.add_word( ich, w )
                 if w.is_eoe_word and ich==0:
                     self.nEvents = self.nEvents + 1 
-
+                    
     def add_word( self, channel, word=HGCwordMP7() ) :
         self.data_32b[channel].append( word )
-
+        
     def add_data( self, channel, data ) :
         self.data_32b[channel] = self.data_32b[channel] + data
 
@@ -57,13 +80,68 @@ class MP7 :
         self.nEvents = self.nEvents + 1
         for ich in range(0, self.nChannels) :
             self.add_word( ich, word=HGCwordMP7( soe_word=True ) )
-        print self.data_32b[0]
+        #print self.data_32b[0]
 
     def add_eoe( self ) :
         for ich in range(0, self.nChannels) :    
             self.add_word( ich, word=HGCwordMP7( eoe_word=True ) )
 
+    def add_random_event( self, channel, nSeeds=1, nNonSeeds=10, thrEnergy=2, seedEnergy=5, energyBits=8, nWafers=6 ) :
+        maxRow = 7
+        maxCol = 7
+        
+        maxEnergy = pow(2, energyBits)-1
+        self.add_soe()
+        ### SEEDs
+        for iSeed in range(0, nSeeds) :
+            add = False
+            w = 0
+            TCid = HGCid()
+            energy = random.randint( seedEnergy, maxEnergy )
+            while not add :
+                w = random.randint( 0, nWafers-1 )
+                TCid.randomize( maxRow, maxCol )
+                if (TCid.col - TCid.row) <-4 or (TCid.col - TCid.row) >3 : # this is considering the X colums that are not present in the wafer
+                    continue
+                entryFound = False
+                for word in self.data_32b[channel] :
+                    if word.hgc_id == TCid and word.wafer == w :
+                        entryFound=True
+                        continue
+                add = not entryFound
+                
+            self.add_word( channel=channel, word=HGCwordMP7( valid=1, energy=energy, wafer=w, row=TCid.row, col=TCid.col ) )
+
+        ### non SEEDs
+        for iNonSeed in range(0, nNonSeeds) :
+            add = False
+            w= 0
+            TCid = HGCid()
+            energy = random.randint( thrEnergy, seedEnergy-1 )
+            while not add :
+                w = random.randint( 0, nWafers-1 )
+                TCid.randomize( maxRow, maxCol )
+                if (TCid.col - TCid.row) <-4 or (TCid.col - TCid.row) >3 : # this is considering the X colums that are not present in the wafer
+                    continue
+                entryFound = False
+                for word in self.data_32b[channel] :
+                    if word.hgc_id == TCid and word.wafer == w :
+                        entryFound=True
+                        continue
+
+                add = not entryFound
+                
+            #print iNonSeed,add,w,TCid,(TCid.col - TCid.row)
+            self.add_word( channel=channel, word=HGCwordMP7( valid=1, energy=energy, wafer=w, row=TCid.row, col=TCid.col ) )
+            
+        self.add_eoe()
+        
+            
     def dump( self ) :
+        #print self.nEvents,len(self.data_32b[0])
+
+        self.add_zeros()
+        
         # padding 
         data_max = 0
         for data in self.data_32b :
@@ -91,10 +169,10 @@ class MP7 :
         
         output = output+'\n'
 
-
         # dumping the data
         self.add_zeros()
-        for iframe in range( 0, len(self.data_32b[0]) ) :
+        #print 'data_max',data_max
+        for iframe in range( 0, data_max ) :
             output = output+'Frame '+str(iframe).zfill(5)+' :'
             for ich in range(0, len(self.data_32b) ) :
                 output = output+' '+self.data_32b[ich][iframe].get_32b_hex_string()
@@ -107,3 +185,88 @@ class MP7 :
         f.write( self.dump() )
         f.close()
 
+    ## filter all the tc that are in a box around the seeds 
+    def clusterise_geo( self, channel=0, thrEnergy=2, seedEnergy=5, nRows=5, nCols=5 ) :
+        
+        # select the seeds
+        gSeedIDs = []
+        globalIDs = []
+
+        # wafers' ofssets of the TCid (0,0)
+        offsets = [HGCid(row=8, col=0), HGCid(row=16, col=4), HGCid(row=4, col=4), HGCid(row=12, col=8), HGCid(row=0, col=8), HGCid(row=8, col=12) ]
+
+        for word in self.data_32b[channel] :
+            if word.energy > seedEnergy :
+                gSeedIDs.append( word.hgc_id  + offsets[ word.wafer ] )
+            globalIDs.append( word.hgc_id + offsets[ word.wafer ] )
+        
+        wordsToRemovePos = []
+        for i,gID in enumerate( globalIDs ) :
+            keep = False
+            if self.data_32b[channel][i].is_eoe() or self.data_32b[channel][i].is_soe() :
+                keep = True
+            elif gID in gSeedIDs :
+                keep = True
+            else :
+                for seedID in gSeedIDs :
+                    diffID = seedID - gID
+                    if diffID.row >= -(nRows-1)/2  and diffID.row <= (nRows-1)/2 and diffID.col >= -(nCols-1)/2 and diffID.col <= (nCols-1)/2 :
+                        keep = True
+                        continue
+            if not keep  :
+                wordsToRemovePos.append(i)
+                
+        for i in reversed(wordsToRemovePos) :
+            self.data_32b[channel].pop(i)
+
+        self.data_32b[channel].insert(0, HGCwordMP7() )
+        self.data_32b[channel].insert(0, HGCwordMP7() )
+        self.data_32b[channel].append( HGCwordMP7() )
+        self.data_32b[channel].append( HGCwordMP7() )
+
+        return len(clusters)
+
+    ## filter all the tc that are in a box around the seeds, the tc that are not topologicaly connected to the seed are removed.
+    def clusterise_NN( self, channel=0, thrEnergy=2, seedEnergy=5, nRows=5, nCols=5 ) :
+
+        # clusters' list
+        clusters = []
+        
+        for tc in self.data_32b[channel] :
+            #print tc.wafer,tc.hgc_id.row,tc.hgc_id.col,tc.energy, seedEnergy
+            if tc.energy > seedEnergy :
+                isSeed = True
+                for clu in clusters :
+                    if clu.is_NN(tc) :
+                        clu.addTC( tc )
+                        isSeed = False
+                        break
+                if isSeed :
+                    #print 'new cluster'
+                    clusters.append( cluster( tc ) ) 
+
+        for r in range(0, 7) : 
+            for i,tc in enumerate( self.data_32b[channel] ) :
+                if tc.valid!=1 :
+                    continue
+                #print 'testing',tc.wafer,tc.hgc_id.row,tc.hgc_id.col,tc.energy,seedEnergy
+                for clu in clusters :
+                    #if tc.wafer==1 and tc.hgc_id.row == 2 and tc.hgc_id.col==5 :
+                    #    print clu.is_NN(tc, verbose=True)
+              
+                    if clu.is_NN(tc, verbose=False) and clu.is_pertinent(tc, 5, 5) and not clu.contains(tc):
+                        clu.addTC( tc )
+                        #print "adding",tc.get_32b_hex_string(),"to seed",clu.tcs[0].get_32b_hex_string(),"clu contains now",len(clu.tcs),"tcs"
+                        #print tc.wafer,tc.hgc_id.row,tc.hgc_id.col,tc.energy,seedEnergy
+                        
+        self.data_32b[channel] = []
+
+        self.data_32b[channel].append( HGCwordMP7() )
+        self.data_32b[channel].append( HGCwordMP7() )
+        for clu in clusters :
+            for tc in clu.getTCs() :
+                self.data_32b[channel].append( tc )
+        self.data_32b[channel].append( HGCwordMP7() )
+        self.data_32b[channel].append( HGCwordMP7() )
+
+        return len(clusters)

python/naming/modules/panel.py

@@ -30,7 +30,6 @@ class Panel :
         self.wafers[0] = {} 
         #self.wafers[0][0] = ZoltanWafer(self.wafer_side, wafer_type='HG')
         
-        
         for row in range( 0, self.nRow ) :
             self.wafers[row] = {} 
       
@@ -57,13 +56,14 @@ class Panel :
         return None
 
     def load_mp7( self, board=MP7(), channel=0 ) :
-        for w in board.data_32b[channel] :
-            wafer = self.get_wafer( w.wafer )
-            tc = wafer.get_tc( w.hgc_id )
+        for word in board.data_32b[channel] :
+            wafer = self.get_wafer( word.wafer )
+            tc = wafer.get_tc( word.hgc_id )
+            #print word.hgc_id
             if tc != None :
-                tc.set_energy( w.energy )
+                tc.set_energy( word.energy )
             else :
-                print 'error in panel.load_mp7() member function'
+                print 'error loading TC in panel.load_mp7() (TC ['+word.get_32b_hex_string()+'] w',word.wafer,word.hgc_id,' does not exists)'
 
     def draw( self ) :
         for row in range( 0, self.nRow ) :
@@ -99,6 +99,16 @@ class Panel :
         self.board.add_eoe()
 
     def gui_dump_mp7( self, event ) :
+        #print ' >>> Dumping ',self.board.nEvents,' events into MP7 data format'
+        self.dump_to_file('out.mp7')
+
+    # rand events
+    def gen_random_event( self, channel=0, nSeeds=1, nNonSeeds=10, thrEnergy=2, seedEnergy=5, energyBits=8, nWafers=6 ) :
+        print ' >>>  Generating 1 random event.'
+        self.board.add_random_event( channel=channel, nSeeds=nSeeds, nNonSeeds=nNonSeeds, thrEnergy=thrEnergy, seedEnergy=seedEnergy, energyBits=energyBits, nWafers=nWafers )
+        print ' >>>  done.'
+
+    # dimp the panel into a MP7 data format txt event 
+    def dump_to_file( self, fileName='out.mp7' ) :
         print ' >>> Dumping ',self.board.nEvents,' events into MP7 data format'
-        self.board.dump_to_file('out.mp7')
-                
+        self.board.dump_to_file( fileName )

python/naming/modules/wafer.py

@@ -350,7 +350,7 @@ class Wafer(WaferBase):
                 self.cells[row][col].set_id( HGCid( self.cells[row][col].centre.x, self.cells[row][col].centre.y ) )
 
 
-    def map_trigger_cells_LG(self) :
+    def map_trigger_cells_LG(self) : # LG = Low granularity
         
         xOffset = self.cell_width/4
         yOffset = -3*self.cell_side/4

python/naming/newout.mp7

-Board MP7
- Quad/Chan  :    q00c1      q00c2      q00c3      q01c1      q01c2      q01c3      q02c1      q02c2      q02c3      q03c1      q03c2      q03c3      q04c1      q04c2      q04c3      q05c1      q05c2      q05c3      q06c1      q06c2      q06c3      q07c1      q07c2      q07c3      q08c1      q08c2      q08c3      q09c1      q09c2      q09c3      q10c1      q10c2      q10c3      q11c1      q11c2      q11c3      q12c1      q12c2      q12c3      q13c1      q13c2      q13c3      q14c1      q14c2      q14c3      q15c1      q15c2      q15c3      q16c1      q16c2      q16c3      q17c1      q17c2      q17c3      q18c1      q18c2      q18c3      q19c1      q19c2      q19c3      q20c1      q20c2      q20c3      q21c1      q21c2      q21c3      q22c1      q22c2      q22c3      q23c1      q23c2      q23c3  
-Frame 00000 : 1v0000062E 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000 0v00000000
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python/naming/out.mp7

-Board MP7
- Quad/Chan  :    q00c1      q00c2      q00c3      q01c1      q01c2      q01c3      q02c1      q02c2      q02c3      q03c1      q03c2      q03c3      q04c1      q04c2      q04c3      q05c1      q05c2      q05c3      q06c1      q06c2      q06c3      q07c1      q07c2      q07c3      q08c1      q08c2      q08c3      q09c1      q09c2      q09c3      q10c1      q10c2      q10c3      q11c1      q11c2      q11c3      q12c1      q12c2      q12c3      q13c1      q13c2      q13c3      q14c1      q14c2      q14c3      q15c1      q15c2      q15c3      q16c1      q16c2      q16c3      q17c1      q17c2      q17c3      q18c1      q18c2      q18c3      q19c1      q19c2      q19c3      q20c1      q20c2      q20c3      q21c1      q21c2      q21c3      q22c1      q22c2      q22c3      q23c1      q23c2      q23c3  
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python/naming/panelComparison.py

+#!/usr/bin/python
+
+##import math, copy
+##import numpy as np
+##import collections
+import sys
+from optparse import OptionParser
+##
+##
+# matlibplot
+import matplotlib.path as mplPath
+import matplotlib.pyplot as plt
+import matplotlib.figure as pfig
+from matplotlib.widgets import Button
+
+##
+### my classes
+##from param.var import *
+
+#from modules.cell import * 
+