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Commit 34e4c801 authored by Justin Cleveland's avatar Justin Cleveland
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Yep, replacing the original config files

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src/main/webapp/WEB-INF/conf/InstanceSettings.xml 0 → 100644
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<?xml version="1.0" encoding="UTF-8"?>
<!-- edited with XMLSPY v2004 rel. 3 U (http://www.xmlspy.com) by Tim Olsen (Washington University) -->
<Instance_Settings xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="schemas/xdat/instance.xsd"
site_url="http://localhost:8080" admin_email="administrator@xnat.org" archive_root_path="/data/xnat/archive"
prearchive_path="/data/xnat/prearchive" cache_path="/data/xnat/cache"
smtp_server="irony.wusm.wustl.edu" ftp_path="/data/xnat/ftp" build_path="/data/xnat/build"
pipeline_path="/data/xnat/pipeline" require_login="true" user_registration="false" enable_csrf_token="true">
<Databases>
<Database Type="POSTGRESQL" Id="xnat" Driver="org.postgresql.Driver" Url="jdbc:postgresql://localhost/xnat" User="xnat" Pass="xnat" MaxConnections="10"/>
</Databases>
<Models>
<Data_Model File_Name="security.xsd" File_Location="schemas/security" DB="xnat"/>
<Data_Model File_Name="birnprov.xsd" File_Location="schemas/birn" DB="xnat"/>
<Data_Model File_Name="xnat.xsd" File_Location="schemas/xnat" DB="xnat"/>
<Data_Model File_Name="workflow.xsd" File_Location="schemas/pipeline" DB="xnat"/>
<Data_Model File_Name="repository.xsd" File_Location="schemas/pipeline" DB="xnat"/>
<Data_Model File_Name="project.xsd" File_Location="schemas/project" DB="xnat"/>
<Data_Model File_Name="assessments.xsd" File_Location="schemas/assessments" DB="xnat"/>
<Data_Model File_Name="catalog.xsd" File_Location="schemas/catalog" DB="xnat"/>
<Data_Model File_Name="protocolValidation.xsd" File_Location="schemas/validation" DB="xnat"/>
<Data_Model File_Name="screeningAssessment.xsd" File_Location="schemas/screening" DB="xnat"/>
<!--<Data_Model File_Name="ext.xsd" File_Location="schemas/ext" DB="xnat"/>-->
<!-- Start modules schemas: Reserved for xnat_builder, don't modify anything between this line and the end modules line. -->
<!-- End modules schemas: Reserved for xnat_builder, don't modify anything between this line and the start modules line. -->
</Models>
</Instance_Settings>
src/main/webapp/WEB-INF/web.xml 0 → 100644
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View file @ 34e4c801
<?xml version="1.0" encoding="UTF-8"?>
<!--
~ D:/Development/XNAT/1.6/xnat_builder_1_6dev/plugin-resources/originals/application-web.xml
~ XNAT http://www.xnat.org
~ Copyright (c) 2014, Washington University School of Medicine
~ All Rights Reserved
~
~ Released under the Simplified BSD.
~
~ Last modified 2/7/14 12:19 PM
-->
<web-app xmlns="http://java.sun.com/xml/ns/javaee" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://java.sun.com/xml/ns/javaee http://java.sun.com/xml/ns/javaee/web-app_3_0.xsd" version="3.0">
<!-- ======================================================================== -->
<!-- -->
<!-- Uncomment the following block if you want to use the Session Service -->
<!-- -->
<!-- ======================================================================== -->
<!--
<listener>
<listener-class>org.apache.turbine.services.session.SessionListener</listener-class>
</listener>
-->
<!-- HttpSessionEventPublisher enables session counting for the concurrent session filter, XnatSessionEventPublisher requires the contextAttribute parameter -->
<context-param>
<param-name>contextAttribute</param-name>
<param-value>org.springframework.web.servlet.FrameworkServlet.CONTEXT.spring-mvc</param-value>
</context-param>
<context-param>
<param-name>org.restlet.component</param-name>
<param-value>org.nrg.xnat.restlet.XNATComponent</param-value>
</context-param>
<!--
This setting will be automatically configured according to xdat.url in build.properties.
You can still set it manually if desired (not here - do it in xnat/projects/xnat/src/web-conf/web-projectMerge.xml).
-->
<context-param>
<param-name>org.restlet.autoWire</param-name>
<param-value>false</param-value>
</context-param>
<filter>
<filter-name>springSecurityFilterChain</filter-name>
<filter-class>org.springframework.web.filter.DelegatingFilterProxy</filter-class>
<init-param>
<param-name>contextAttribute</param-name>
<param-value>org.springframework.web.servlet.FrameworkServlet.CONTEXT.spring-mvc</param-value>
</init-param>
</filter>
<filter>
<filter-name>updateExpirationCookie</filter-name>
<filter-class>org.nrg.xnat.restlet.util.UpdateExpirationCookie</filter-class>
</filter>
<filter-mapping>
<filter-name>springSecurityFilterChain</filter-name>
<url-pattern>/*</url-pattern>
</filter-mapping>
<filter-mapping>
<filter-name>updateExpirationCookie</filter-name>
<url-pattern>/*</url-pattern>
</filter-mapping>
<listener>
<listener-class>org.nrg.xnat.security.XnatSessionEventPublisher</listener-class>
</listener>
<listener>
<listener-class>org.apache.axis.transport.http.AxisHTTPSessionListener</listener-class>
</listener>
<servlet>
<servlet-name>xnat17</servlet-name>
<servlet-class>org.apache.turbine.Turbine</servlet-class>
<init-param>
<param-name>properties</param-name>
<param-value>WEB-INF/conf/TurbineResources.properties</param-value>
</init-param>
<load-on-startup>1</load-on-startup>
</servlet>
<!-- BEGIN XNAT CUSTOMIZATIONS -->
<!-- ======================================================================== -->
<!-- INSERTED FOR Spring Framework -->
<!-- ======================================================================== -->
<servlet>
<servlet-name>spring-mvc</servlet-name>
<servlet-class>org.springframework.web.servlet.DispatcherServlet</servlet-class>
<init-param>
<param-name>contextConfigLocation</param-name>
<param-value>/WEB-INF/conf/root-spring-config.xml</param-value>
</init-param>
<load-on-startup>1</load-on-startup>
</servlet>
<servlet>
<servlet-name>xdat</servlet-name>
<servlet-class>org.nrg.xdat.servlet.XDATServlet</servlet-class>
<load-on-startup>1</load-on-startup>
</servlet>
<!-- ======================================================================== -->
<!-- INSERTED FOR RESTServlet -->
<!-- ======================================================================== -->
<servlet>
<servlet-name>RestletServlet</servlet-name>
<servlet-class>org.nrg.xnat.restlet.servlet.XNATRestletServlet</servlet-class>
<load-on-startup>2</load-on-startup>
</servlet>
<!-- ======================================================================== -->
<!-- INSERTED FOR ArchiveServlet -->
<!-- ======================================================================== -->
<servlet>
<servlet-name>ArchiveServlet</servlet-name>
<servlet-class>org.nrg.xnat.servlet.ArchiveServlet</servlet-class>
<load-on-startup>2</load-on-startup>
</servlet>
<!-- ======================================================================== -->
<!-- INSERTED FOR Ajax -->
<!-- ======================================================================== -->
<servlet>
<servlet-name>XDATAjaxServlet</servlet-name>
<servlet-class>org.nrg.xdat.servlet.XDATAjaxServlet</servlet-class>
</servlet>
<!-- ======================================================================== -->
<!-- INSERTED FOR Apache Axis -->
<!-- ======================================================================== -->
<servlet>
<servlet-name>AxisServlet</servlet-name>
<servlet-class>org.apache.axis.transport.http.AxisServlet</servlet-class>
</servlet>
<servlet>
<servlet-name>AdminServlet</servlet-name>
<servlet-class>org.apache.axis.transport.http.AdminServlet</servlet-class>
<load-on-startup>100</load-on-startup>
</servlet>
<servlet>
<servlet-name>SOAPMonitorService</servlet-name>
<servlet-class>org.apache.axis.monitor.SOAPMonitorService</servlet-class>
<init-param>
<param-name>SOAPMonitorPort</param-name>
<param-value>5001</param-value>
</init-param>
<load-on-startup>100</load-on-startup>
</servlet>
<!-- ======================================================================== -->
<!-- INSERTED FOR Image Viewer -->
<!-- ======================================================================== -->
<servlet>
<servlet-name>PopulateServlet</servlet-name>
<servlet-class>org.nrg.plexiViewer.Servlet.PopulateServlet</servlet-class>
</servlet>
<servlet>
<servlet-name>ImageDistributorServlet</servlet-name>
<servlet-class>org.nrg.plexiViewer.Servlet.ImageDistributorServlet</servlet-class>
</servlet>
<servlet>
<servlet-name>ImageLoaderServlet</servlet-name>
<servlet-class>org.nrg.plexiViewer.Servlet.ImageLoaderServlet</servlet-class>
</servlet>
<servlet>
<servlet-name>MontageImageLoaderServlet</servlet-name>
<servlet-class>org.nrg.plexiViewer.Servlet.MontageImageLoaderServlet</servlet-class>
</servlet>
<servlet>
<servlet-name>GetRecFileContents</servlet-name>
<servlet-class>org.nrg.plexiViewer.Servlet.GetRecFileContents</servlet-class>
</servlet>
<servlet>
<servlet-name>getAsegRegionVolumes</servlet-name>
<servlet-class>org.nrg.plexiViewer.Servlet.getAsegRegionVolumes</servlet-class>
</servlet>
<servlet>
<servlet-name>PublisherServlet</servlet-name>
<servlet-class>org.nrg.plexiViewer.Servlet.PublisherServlet</servlet-class>
</servlet>
<servlet-mapping>
<servlet-name>spring-mvc</servlet-name>
<url-pattern>/admin/*</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>spring-mvc</servlet-name>
<url-pattern>/xapi/*</url-pattern>
</servlet-mapping>
<!-- END XNAT CUSTOMIZATIONS -->
<servlet-mapping>
<servlet-name>xnat17</servlet-name>
<url-pattern>/app/*</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>xdat</servlet-name>
<url-pattern>/xdat/*</url-pattern>
</servlet-mapping>
<!-- ======================================================================== -->
<!-- INSERTED FOR RESTServlet -->
<!-- ======================================================================== -->
<servlet-mapping>
<servlet-name>RestletServlet</servlet-name>
<url-pattern>/REST/*</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>RestletServlet</servlet-name>
<url-pattern>/data/*</url-pattern>
</servlet-mapping>
<!-- ======================================================================== -->
<!-- INSERTED FOR Ajax -->
<!-- ======================================================================== -->
<servlet-mapping>
<servlet-name>XDATAjaxServlet</servlet-name>
<url-pattern>/ajax/*</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>XDATAjaxServlet</servlet-name>
<url-pattern>/servlet/XDATAjaxServlet</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>XDATAjaxServlet</servlet-name>
<url-pattern>/servlet/AjaxServlet</url-pattern>
</servlet-mapping>
<!-- ======================================================================== -->
<!-- INSERTED FOR Apache Axis -->
<!-- ======================================================================== -->
<servlet-mapping>
<servlet-name>AdminServlet</servlet-name>
<url-pattern>/servlet/AdminServlet</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>AxisServlet</servlet-name>
<url-pattern>/servlet/AxisServlet</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>AxisServlet</servlet-name>
<url-pattern>*.jws</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>AxisServlet</servlet-name>
<url-pattern>/services/*</url-pattern>
</servlet-mapping>
<!-- ======================================================================== -->
<!-- INSERTED FOR Image Viewer -->
<!-- ======================================================================== -->
<servlet-mapping>
<servlet-name>SOAPMonitorService</servlet-name>
<url-pattern>/SOAPMonitor</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>PopulateServlet</servlet-name>
<url-pattern>/servlet/PopulateServlet</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>ImageDistributorServlet</servlet-name>
<url-pattern>/servlet/ImageDistributorServlet</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>ImageLoaderServlet</servlet-name>
<url-pattern>/servlet/ImageLoaderServlet</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>MontageImageLoaderServlet</servlet-name>
<url-pattern>/servlet/MontageImageLoaderServlet</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>GetRecFileContents</servlet-name>
<url-pattern>/servlet/GetRecFileContents</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>getAsegRegionVolumes</servlet-name>
<url-pattern>/servlet/getAsegRegionVolumes</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>PublisherServlet</servlet-name>
<url-pattern>/servlet/PublisherServlet</url-pattern>
</servlet-mapping>
<!-- ======================================================================== -->
<!-- INSERTED FOR ArchiveServlet -->
<!-- ======================================================================== -->
<servlet-mapping>
<servlet-name>ArchiveServlet</servlet-name>
<url-pattern>/archive/*</url-pattern>
</servlet-mapping>
<session-config>
<!-- Default to 15 minute session timeouts -->
<session-timeout>15</session-timeout>
</session-config>
<mime-mapping>
<extension>wsdl</extension>
<mime-type>text/xml</mime-type>
</mime-mapping>
<mime-mapping>
<extension>xsd</extension>
<mime-type>text/xml</mime-type>
</mime-mapping>
<!-- ======================================================================== -->
<!-- -->
<!-- Redirect the home page of the application to the turbine servlet -->
<!-- -->
<!-- ======================================================================== -->
<welcome-file-list>
<welcome-file>index.jsp</welcome-file>
<welcome-file>app</welcome-file>
</welcome-file-list>
<!-- ======================================================================== -->
<!-- -->
<!-- Mapping HTTP error codes and exceptions to custom error pages to make -->
<!-- the display a bit more pleasant and preserve system confidentiality. -->
<!-- -->
<!-- ======================================================================== -->
<error-page>
<exception-type>java.lang.Throwable</exception-type>
<location>/app/template/Error.vm</location>
</error-page>
<!-- ======================================================================== -->
<!-- -->
<!-- Make sure that templates, resources and logs are not available through -->
<!-- the servlet container. Remove security constraints or add an authen- -->
<!-- tication role if you need access to these paths. -->
<!-- -->
<!-- ======================================================================== -->
<security-constraint>
<web-resource-collection>
<web-resource-name>templates</web-resource-name>
<url-pattern>/templates/*</url-pattern>
</web-resource-collection>
<web-resource-collection>
<web-resource-name>logs</web-resource-name>
<url-pattern>/logs/*</url-pattern>
</web-resource-collection>
<web-resource-collection>
<web-resource-name>resources</web-resource-name>
<url-pattern>/resources/*</url-pattern>
</web-resource-collection>
<auth-constraint />
</security-constraint>
</web-app>
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