Got build fully working, can deploy to remote Tomcat, still doesn't run.

build.gradle

src/main/java/org/nrg/xdat/om/base/BaseWrkWorkflowdata.java

src/main/java/org/nrg/xdat/om/base/BaseXnatProjectdata.java

src/main/java/org/nrg/xnat/configuration/ReactorConfig.java

...ava/org/nrg/xnat/event/listeners/AutoRunEmailHandler.java

.../org/nrg/xnat/event/listeners/AutomatedScriptHandler.java

...rg/nrg/xnat/event/listeners/DicomToNiftiEmailHandler.java

...rg/nrg/xnat/event/listeners/PipelineEmailHandlerAbst.java

.../xnat/event/listeners/WorkflowStatusEventHandlerAbst.java

...java/org/nrg/xnat/restlet/servlet/XNATRestletServlet.java

...java/org/nrg/xnat/security/XnatExpiredPasswordFilter.java

...at/services/messaging/automation/GroovyScriptRequest.java

...java/org/nrg/xnat/turbine/modules/actions/AddProject.java

...a/org/nrg/xnat/turbine/modules/actions/ModifyProject.java

.../nrg/xnat/turbine/modules/actions/XDATChangePassword.java

...g/nrg/xnat/turbine/modules/screens/XDATScreen_MyXNAT.java

...g/xnat/turbine/modules/screens/XDATScreen_UpdateUser.java

...rg/nrg/xnat/workflow/WorkflowNotificationHandlerAbst.java

.../org/nrg/xnat/workflow/listeners/AutoRunEmailHandler.java

.../org/nrg/xnat/workflow/listeners/GroovyScriptTrigger.java