Added DicomSCPApi to use Spring REST controller instead of restlet, updated DicomSCPManager to support required calls. Refactored XNAT support into abstract base class. Updated XnatWebAppInitializer to use plugin instead of module.

XNAT-4140 - Refactored scriptEditor.js and added hooks to Scrips.vm to allow loading another script in the currently open editor, which will allow a different version of the script being edited to be loaded on-the-fly.

Added support for multipart form resolver, as well as the multipart configuration for the DispatcherServlet.

Moved SwaggerConfig operations into WebConfig and fixed paths on Swagger resource handlers. Moved UsersApi and related classes into users subpackage. Fixed timeout cookie. Moved InstanceSettings.xml to InstanceSettings.xml.sample and put InstanceSettings.xml into the .gitignore file. Updated some dependency versions.

Performance improvements to Spawner™ spawn.js and $.spawn.js with new methods - spawn.element() and spawn.plus(); Chainable element generator - XNAT.element().div().p('Content'); Specific methods for individual elements - XNAT.element.tag('Content'); These need more testing before widespread usage.

Downgraded Jackson version to 2.6.5 to address compatibility issue with Spring 4.2.4.RELEASE (Jackson 2.7 is not supported until Spring 4.3).

Added session timeout back to web.xml, removed from session event publisher. Added back in missing Spring Security filter chain from move to initializer. Added missing Xalan dependency for security. Added @PreDestroy method for DICOM SCP manager.

Moved initializer and root config classes to initialization package to remove change of double-scanning. Fixed a few other items.

Fixed issue where initializing templatized DICOM file namer broke Turbine/Velocity initialization. Added initial delay to prearchive rebuild task.

XNAT-3863 - Develop support for Interface Themes, XNAT-3940 - Develop a themes subdirectories helper utility, XNAT-3941 - Store theme parameter in application context for all other pages to access

HTML updates for style changes; added menu where stored searches will eventually end up; consolidated includes for the footer into a single location; re-enabled left-hand tree code to use the JavaScript; removed references to jQuery UI since we're no longer using it.

Fixed URL processing *for real*; fixed 'Save Search' dialog rendering and validation; adjusted width of wrangled tabs; other styling tweaks; tiny change to randomID() output.

Added initialization SQL to bootstrap user info. Updated InstanceSettings.xml. Changed ${applicationRoot} to ${xnat.home} in log4j.properties. Removed my email address from services.properties. Added explicit references to 4.2.4.RELEASE versions of Spring dependencies.